Illumina whole genome shotgun sequencing of genomic DNA paired-end li... - SRA

SRX340482: Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Solexa-149742' containing sample 'Escherichia coli KOEGE 3 (4a)'
2 ILLUMINA (Illumina HiSeq 2000) runs: 3.1M spots, 626.1M bases, 325.9Mb downloads

UUID: d80e1843-38cc-453d-abdd-ac175240d03d

Design: jumping library

Submitted by: Broad Institute (BI)

Study: E coli UTI Bacteremia

PRJNA186255 • SRP019623 • All experiments • All runs

Sample: Pathogen bacterial, clinical or host-associated sample from Escherichia coli KOEGE 3 (4a)

SAMN01885865 • SRS402251 • All experiments • All runs

Organism: Escherichia coli KOEGE 3 (4a)

Library:

Name: Solexa-149742

Instrument: Illumina HiSeq 2000

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Spot descriptor:

1 forward102 reverse

Experiment attributes: (show all 12 attributes...) (hide...)

analysis_type: AssemblyWithReference

gssr_id: 301210.0

library_type: IlluminaStufferlessJump

lsid: broadinstitute.org:bsp.prod.sample:425N1

material_type: DNA:DNA Somatic

product_order: PDO-291

product_part_number: P-MCV-0001

project: G30232

research_project: RP-192

root_sample_id: SM-2TD3D

sample_id: SM-425N1

work_request: 35883

Pipeline: show...hide...

Name	Step	Program	Version	Notes
base caller	2013-05-08 00:28:38.0	GAPipeline	RTA1.15.19.5	Sequencer Application 1.6.8.6

Runs: 2 runs, 3.1M spots, 626.1M bases, 325.9Mb

Run	# of Spots	# of Bases	Size	Published
SRR958499	1,551,774	313.5M	161.9Mb	2013-08-28
SRR958500	1,547,565	312.6M	164Mb	2013-08-28

ID:: 478266

SRA

Sequence Read Archive

Result Filters

Send to:

Supplemental Content

Related information

Recent activity